Senger Soaplab Bosc2009

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Information about Senger Soaplab Bosc2009
Technology

Published on June 29, 2009

Author: bosc

Source: slideshare.net

[Bio* Update] [email_address]

A generator of Web Services for accessing command-line programs typical (and working) candidate: hundreds of EMBOSS programs are wrapped as Soaplab web services A generator of Web Services for accessing various Soaplab plug-ins: access to screen-scraped data from web pages access to algorithmic methods written as Java classes http://soaplab.sourceforge.net/soaplab2

A generator of Web Services for accessing command-line programs

typical (and working) candidate: hundreds of EMBOSS programs are wrapped as Soaplab web services

A generator of Web Services for accessing various Soaplab plug-ins:

access to screen-scraped data from web pages

access to algorithmic methods written as Java classes

http://soaplab.sourceforge.net/soaplab2

A user describes her command-line tools in the EMBOSS-like ACD file A developer may add her own plug-in (implementing a Job) Soaplab generator produces complete web services

A user describes her command-line tools in the EMBOSS-like ACD file

A developer may add her own plug-in (implementing a Job)

Soaplab generator produces complete web services

Soaplab typed services more on the next slide Soaplab services accessing LSF queues New release 2.2.0 the above and bug fixes

Soaplab typed services

more on the next slide

Soaplab services accessing LSF queues

New release 2.2.0

the above

and bug fixes

Typed services are parallel services to any other existing Soaplab web services – why to have them? they have their inputs and outputs fully expressed in WSDL (XSD) which means that third-party tools working with WSDL can be used with new Soaplab services e.g. soapui they can be used in Taverna with a regular WSDL scavenger All development was in Peter Rice's Group (EBI)

Typed services are parallel services to any other existing Soaplab web services – why to have them?

they have their inputs and outputs fully expressed in WSDL (XSD)

which means that third-party tools working with WSDL can be used with new Soaplab services

e.g. soapui

they can be used in Taverna with a regular WSDL scavenger

All development was in

Peter Rice's Group (EBI)

Update to Soaplab 2.2.0 from the CVS or take the release Define one new property (in the build.properties) typedinterface.enable = true And deploy services using the usual Ant’s tasks: jaxdeploy or axis1deploy That’s it

Update to Soaplab 2.2.0

from the CVS or take the release

Define one new property (in the build.properties)

typedinterface.enable = true

And deploy services using the usual Ant’s tasks:

jaxdeploy or axis1deploy

That’s it

There will be soon a BioCatalogue plug-in to access list of Soaplab typed web services The report result will be structured and defined by an XSD allowing better extractions of individual report parts Semantic annotation of services and data types (Peter Rice and Jon Ison)

There will be soon a BioCatalogue plug-in to access list of Soaplab typed web services

The report result will be structured and defined by an XSD

allowing better extractions of individual report parts

Semantic annotation of services and data types (Peter Rice and Jon Ison)

EMBOSS team, EBI Sebastien Moretti, University of Lausanne Your questions, please http://soaplab.sourceforge.net/soaplab2/

EMBOSS team, EBI

Sebastien Moretti, University of Lausanne

Your questions, please

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