Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014

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Information about Improving Scientific Information Sharing by Fostering Reuse -...
Health & Medicine

Published on February 28, 2014

Author: 3roundstones



Most scientific developments are recorded in published papers and communicated via presentations. Scientific findings are presented within organizations, at conferences, via Webinars and other fora. Yet after delivery to an audience, important information is often left to wither on hard drives, document management systems and even the Web. Accessing the underlying data for scientific findings has been the Achilles Heel of researchers due to closed and proprietary systems. This presentation shows an alternative to sharing scientific information using a Linked Data approach.

Improving Scientific Information Sharing by Fostering Reuse of Presentation Material ! by Bernadette Hyland, David Wood, Luke Ruth, James Leigh Conference for Semantics in Healthcare & Life Sciences Boston MA Bernadette Hyland, CEO & co-founder @BernHyland This Presentation 3RoundStones

What we’re currently doing earns us a “No Pass“ • We spend considerable time preparing papers & presentations • Yet important ideas as presentations & papers end up in a CMS or DMS without the data • Data assessment and verification very challenging • My ideas show up in presentations … sometimes with attribution … sometimes not • I have no visibility on who is leveraging my content

In March, a cancer researcher at Amgen pharmaceutical company, based in Thousand Oaks, California, reported that its scientists had repeated experiments in 53 'landmark' papers, but managed to confirm findings from only six of the studies. ….. An internal survey at Bayer HealthCare, headquartered in Leverkusen, Germany, found that inconsistencies between published findings and the company’s own results caused delays or cancellations in about two-thirds of projects.

Today’s Data on the Web

Linked Data on the Web Person Michael a Galway Airport first name Hausenblas last name collector collected at collected by my data measurement ... a measurement date 2011-01-01 or value units of measure 0 degrees Centigrade

Callimachus Enterprise A data integration platform Callimachus Enterprise supports distributed, in-browser workflow creation, editing and publication using the Linked Data model.

Helping organizations surface data and collaborate either behind the firewall or securely on the cloud. ! Used by the Fortune 2000 and US Government agencies to collect, annotate and reuse data on the public Internet and within the enterprise.

Our approach …

Callimachus Enterprise Social features:! • • • OpenAnnotation tags and categories for all resources. Timeline of user activities. Exposed as Linked Data User Profile Document management:! • • • Documents & folders associated with user profiles. Folders can contain data, documents and Callimachus applications. In-browser editing tools are available for many document types.

Document, Provenance & Annotation Metadata in RDF Turtle ! # Document! </p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> a </callimachus/ enterprise/1.3/types/PortableDocument>, foaf:Document ! ! ;!ctrl:hasPage </p/luke/3rs-improving-scientific-informationsharing-20131213.pdf#page=1>! ! ; dcterms:created "2013-12-13T21:57:44.000Z"^^xsd:dateTime! ! ; dcterms:title "3RS Improving Scientific Information Sharing 20131212"! ! ; foaf:depiction </p/luke/3rs-improving-scientific-informationsharing-20131213.pdf?thumbnail=page%3D1>! ! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/t14427d585ddx793#provenance>! ! ; rdfs:label "3RS Improving Scientific Information Sharing 20131213" .! ! # User! ! <p/luke>! calli:hasComponent <p/luke/3rs-improving-scientific-information-sharing-20131213.pdf>! ; calli:hasComponent <p/luke/ann1392238163872> .! ! ! # Annotations for the Document! </p/luke/ann1392238163872> a <callimachus/enterprise/1.3/types/Annotation>, oa:Annotation ! ! ;!oa:annotatedAt "2014-02-12T20:49:51.651Z"^^xsd:DateTime! ! ; oa:annotatedBy </p/luke> ! ! ; oa:hasBody </callimachus/enterprise/1.3/concepts/categories/education>! ! ; oa:hasBody </p/luke/ann1392238163872#body0>! ! ; oa:hasTarget </p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> ! ! ; oa:motivatedBy oa:tagging ! ! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/ t14427d585ddx2510#provenance> .!

You Can Upload: • PDF files (presentations or documents) • Text documents • Image files (.png, .jpg, .gif, .svg) • HTML files, CSS stylesheets, JavaScript files • RDF data! (Turtle, N3, RDF/XML) Developers can also create Linked Data applications!

Get Callimachus 1.3 Open Source Commercially supported

Use a Linked Data approach to share scientific findings Bernadette Hyland @BernHyland Direct +1-571-331-3758

Structured data on the Web David Wood Marsha Zaidman Luke Ruth WITH Michael Hausenblas FOREWORD BY Tim Berners-Lee MANNING

shared innovation™ This work is Copyright © 2011-2014 3 Round Stones Inc. It is licensed under the Creative Commons Attribution 3.0 Unported License
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