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Published on June 19, 2007

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Introduction to Globus with Condor-G:  Introduction to Globus with Condor-G Itzhak Ben Akiva (TAU) David Front (WI) Israel Academic Grid (IAG) Agenda:  Agenda Grid security and certificates Globus Condor-G Condor-G submission examples References Grid Security Infrastructure (GSI):  Grid Security Infrastructure (GSI) GSI is a set of tools, libraries and protocols used in Globus to allow users and applications to securely access resources. Based on a public key infrastructure, with certificate authorities and X509 certificates PKI (CAs and Certificates) SSL/ TLS Proxies and Delegation PKI for credentials SSL for Authentication And message protection Proxies and delegation for secure single Sign-on Public Key Infrastructure (PKI):  Public Key Infrastructure (PKI) PKI allows you to know that a given public key belongs to a given user PKI builds off of asymmetric encryption: Each entity has two keys: public and private Data encrypted with one key can only be decrypted with other. The private key is known only to the entity The public key is given to the world encapsulated in a X.509 certificate Certificates:  Certificates Certificates link between public key andamp; identity of a: Person, organization, or device ('subject') Associated with use of private key Used by a 'relying party' Certificate Authority (CA) are responsible for establishing identity CA generates key pair, and digitally signs the public key making it a Certificate Certificates: what CA to use?:  Certificates: what CA to use? The following possibilities go from the less secure to the most secure: Anyone can become a certificate authority: http://www.onlamp.com/pub/a/onlamp/2003/02/06/linuxhacks.html  Free certificate authorities: http://www.thawte.com/ http://www.verisign.com/ ... Globus CA: http://www-fp.globus.org/gt2.4/admin/guide-verify.html#cert coerces some security limitations such as: Domain of host to get a certificate should be the same as requestor’s email domain EDG CA: http://igc.services.cnrs.fr/Datagrid-fr/english/index.html EDG does not honor Globus certificates. EDG Grants certificates only to people that are known personally by an authorized third person. For each non-Globus CA, each site should configure the CA as being a trusted one. Globus is trusted by default and EDG has RPMs for adding it as a trusted CA. Recommendation: until Machba supplies certificates, use Globus CA. Slide7:  Globus with Condor-G. A resource broker to be added later Globus:  Globus Gurus: Ian Foster Carl Kesselman Globus Project™ www.globus.org Globus is a bag of tools Grid SW projects use Globus What is Globus?:  What is Globus? A research and development project that enables the application of Grid concepts to scientific and engineering computing. Globus Toolkit allows: build Grids, develop Grid applications Globus Project research targets technical challenges and Globus Toolkit supplies a set of services and software libraries to support Grids and Grid applications: (GRAM) resource management (GSI) security (MDS) information infrastructure (GASS) data management (HBM) fault detection (Nexus and globus_io) portability + communication The Globus Toolkit contents :  The Globus Toolkit contents A 'bag of services': components to develop grid applications + programming tools Component have a C application programmer interface (API) Some Components have Java classes and/or command line tools Prototypes of higher components (resource brokers, co-allocators) and services. Others use the Globus Toolkit to develop: higher-level services, application frameworks, and scientific/engineering applications Example: Condor-G uses Globus for its high-throughput computing framework Globus Toolkit: GRAM + GSI :  Globus Toolkit: GRAM + GSI Globus Resource Allocation Manager (GRAM) Resource allocation Process creation Monitoring Management Maps requests expressed in a Resource Specification Language (RSL) into commands to local schedulers and computers. Grid Security Infrastructure (GSI) A single-sign-on, run-anywhere authentication service, local control over access rights mapping from global to local user identities. Smartcard support increases credential security. Globus Toolkit: MDS + GASS :  Globus Toolkit: MDS + GASS Monitoring and Discovery Service (MDS): Extensible Grid information service Combines data discovery mechanisms with the Lightweight Directory Access Protocol (LDAP). Uniform framework for providing and accessing system configuration and status information, such as: Compute server configuration Network status, Locations of replicated datasets Global Access to Secondary Storage (GASS): Implements a variety of automatic and programmer-managed data movement and data access strategies Enables remote programs to read and write local data. Globus Toolkit: Nexus, globus_io, HBM, GPT :  Globus Toolkit: Nexus, globus_io, HBM, GPT Nexus and globus_io: communication services for heterogeneous environments: multimethod communication multithreading single-sided operations The Heartbeat Monitor (HBM): Allows system administrators or ordinary users to detect failure of system components detect failure of application processes Globus Packaging Tool: (GPT): VDT’s Packman installs Globus and Condor-G. Hence, is it more appropriate for Condor-G users. Layered Grid Architecture(By Analogy to Internet Architecture):  Layered Grid Architecture (By Analogy to Internet Architecture) The Globus Toolkit in One Slide:  The Globus Toolkit in One Slide Grid protocols (GSI, GRAM, …) enable resource sharing within virtual orgs; toolkit provides reference implementation ( = Globus Toolkit services) Protocols (and APIs) are central to Globus toolkit Globus Toolkit: missing, weak, plans 1:  Globus Toolkit: missing, weak, plans 1 (GRAM) resource management Condor-G adds: reliable job submission (EDG) Resource broker: choose Globus resource to submit job Globus plans: support end-to-end performance management and fault tolerance via network scheduling, advance reservations, and policy-based authorization. (GSI) security Using X.509 certificates has various limitations. For example: If a user does not use a pass phrase, anyone that puts a hand on her certificate can use it. (MDS) information infrastructure LDAP: too weak for frequently changing information (EDG uses RDBM instead of LDAP) Globus Toolkit: missing, weak, plans 2:  Globus Toolkit: missing, weak, plans 2 (GASS) data management Globus current replica management capabilities are limited Globus plans: provide high-performance access to large amounts of data (terabytes or petabytes). (HBM) fault detection (Nexus and globus_io) portability + communication Others Weak accounting ‘The firewall problem’: In order to submit a Globus job, some Internet ports should be opened. This is a security problem. Weak fabric tools: Installation/configuration: VDT adds configurable installation via Packman EDG adds Client-server installation + updating via LCFG Weak monitoring tools Restricted support for Windows. Globus support for Windows:  Globus support for Windows Port of the Globus Toolkit to the Windows XP/2000 platform is under development/test. Using Grid resources from Windows systems or turn Windows systems into Grid resources: The Java CoG Kit (http://www.globus.org/cog/) provides access to Grid services via the Java programming language, available on Windows. A Java-based GRAM service is currently being developed. The Condor software from the Condor Project at the University of Wisconsin (http://www.cs.wisc.edu/condor/) provides job management services that allow you to submit jobs to a local service that then submits your jobs to remote resources for execution. Condor can use Grid resources to execute these jobs. Condor is available for Windows. Globus toolkit (re)structure:  Globus toolkit (re)structure GRAM MDS GSI GridFTP MDS GSI ??? GSI Reliable invocation Soft state management Notification Compute Resource Data Resource Other Service or Application Lots of good mechanisms, but (with the exception of GSI) not that easily incorporated into other systems Service naming Service Oriented Architecture (SOA):  Service Oriented Architecture (SOA) Service Registry Service Requestor Service Provider New buzzwords: Services (in addition to protocols and APIs) Open Grid Services Architecture (OGSA) Web services Soap XML OGSA may become standard The Grid Service =Interfaces/Behaviors + Service Data:  The Grid Service = Interfaces/Behaviors + Service Data Service data element Service data element Service data element Implementation Binding properties: - Reliable invocation - Authentication Hosting environment/runtime ('C', J2EE, .NET, …) Condor-G:  Condor-G Guru: Miron Livny Condor Project: http://www.cs.wisc.edu/condor Condor-G manual: http://www.cs.wisc.edu/condor/manual/v6.4/5_2Condor_G.html Condor is a scheduler, similar to PBS, LSF and others Condor-G is (the submission) part of Condor. It adds to Globus Reliable job submission Condor-G from Globus eyes:  Condor-G from Globus eyes Condor-G adds to Globus reliable job submission. It lets you: Submit jobs into a queue have a log detailing the life cycle of your jobs manage your input and output files along with everything else you expect from a job queuing system. Condor-G does more than Globus toolkit's globusrun command: It allows you to submit many jobs at once and then to monitor those jobs with a convenient interface receive notification when jobs complete or fail maintain your Globus credentials which may expire while a job runs Condor-G is a fault-tolerant system: If your machine crashes, you can still perform all of these functions when your machine returns to life. Condor-G from Condor eyes:  Condor-G from Condor eyes Condor-G is a Globus-enabled version of the Condor scheduler. It uses Globus to handle inter-organizational problems like: Security Resource management for supercomputers, Executable staging. Hence: The same Condor tools that access local resources are now able to use the Globus protocols to access resources at multiple sites. Condor-G manages both a queue of jobs and the resources from one or more sites where those jobs can execute. It communicates with these resources and transfers files to and from these resources using Globus mechanisms, such as: GSI GRAM protocol for job submission, and a local GASS server for file transfers. The mutual look: Condor can be used to submit jobs to systems managed by Globus. Globus tools can be used to submit jobs to systems managed by Condor. how Condor-G interacts with Globus protocols:  how Condor-G interacts with Globus protocols Figure 5.1: Remote Execution by Condor-G on Globus managed resources Submitting a job to Condor-G: example 1:  Submitting a job to Condor-G: example 1 Run your compiled program on a different Globus resource: Make sure your Condor server service is running on the Condor server. (Not explained here) Make sure you have your Grid credentials, create a proxy: grid-proxy-init To submit a job: condor_ submit andlt; submit-description-file-nameandgt; The following sample runs a job on the Origin2000 at NCSA: executable = test globusscheduler = modi4.ncsa.uiuc.edu/jobmanager universe = globus output = test.out log = test.log queue The executable for this example is transferred from the local machine to the remote machine. By default, Condor transfers the executable, as well as any files specified by the input command. This executable must be compiled for the correct intended platform. Submitting a job to Condor-G example 1 cont.:  Submitting a job to Condor-G example 1 cont. The globusscheduler command is dependent on the scheduling software available on remote resource. This required command will change based on the Grid resource intended for execution of the job. All Condor-G jobs are submitted to the globus universe. Hence: universe = globus is always required in the submit description file. IO: No input file is specified for this example job. Any output (file specified by the output) or error (file specified by the error) is transferred from the remote machine to the local machine as it is produced. This implies that these files may be incomplete in the case where the executable does not finish running on the remote resource. The job log file is maintained on the local machine. To submit this job to Condor-G for execution on the remote machine, use: condor_submit test.submit where test.submit is the name of the submit description file. Submitting a job to Condor-G example 1 cont. :  Submitting a job to Condor-G example 1 cont. Example output from condor_ q for this submission looks like: % condor_q -- Submitter: wireless48.cs.wisc.edu : andlt;128.105.48.148:33012andgt; : wireless48.cs.wi ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD 7.0 epaulson 3/26 14:08 0+00:00:00 I 0 0.0 test 1 jobs; 1 idle, 0 running, 0 held After a short time, Globus accepts the job. Again running condor_ q will now result in % condor_q -- Submitter: wireless48.cs.wisc.edu : andlt;128.105.48.148:33012andgt; : wireless48.cs.wi ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD 7.0 epaulson 3/26 14:08 0+00:01:15 R 0 0.0 test 1 jobs; 0 idle, 1 running, 0 held Then, very shortly after that, the queue will be empty again, because the job has finished: % condor_q -- Submitter: wireless48.cs.wisc.edu : andlt;128.105.48.148:33012andgt; : wireless48.cs.wi ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD 0 jobs; 0 idle, 0 running, 0 held Submitting a job to Condor-G example 2:  Submitting a job to Condor-G example 2 Run the (prestaged) Unix ls program on a different Globus resource: executable = /bin/ls Transfer_Executable = false globusscheduler = vulture.cs.wisc.edu/jobmanager universe = globus output = ls-test.out log = ls-test.log queue The executable is pre-staged. Being on the remote machine, there is no need to transfer it before execution. The required globusscheduler and universe commands are present. The command Transfer_Executable = FALSE identifies the executable as being pre-staged. In this case, the executable command gives the path to the executable on the remote machine. Submitting a job to Condor-G example 3:  Submitting a job to Condor-G example 3 Submit a Perl script to be run as a Condor job. The Perl script both lists and sets environment variables for a job. Save the following Perl script with the name env-test.pl, to be used as a Condor job executable: #!/usr/bin/env perl foreach $key (sort keys(%ENV)) { print '$key = $ENV{$key}\n' } exit 0; Run the Unix command chmod 755 env-test.pl to make the Perl script executable. Create the following submit description file executable = env-test.pl globusscheduler = biron.cs.wisc.edu/jobmanager universe = globus environment = foo=bar; zot=qux output = env-test.out log = env-test.log queue Submitting a job to Condor-G example 3 cont.:  Submitting a job to Condor-G example 3 cont. When the job has completed, the output file env-test.out should contain something like this: GLOBUS_GRAM_JOB_CONTACT = https://biron.cs.wisc.edu:36213/30905/1020633947/ GLOBUS_GRAM_MYJOB_CONTACT = URLx-nexus://biron.cs.wisc.edu:36214 GLOBUS_LOCATION = /usr/local/globus GLOBUS_REMOTE_IO_URL = /home/epaulson/.globus/.gass_cache/globus_gass_cache_1020633948 HOME = /home/epaulson LANG = en_US LOGNAME = epaulson X509_USER_PROXY = /home/epaulson/.globus/.gass_cache/globus_gass_cache_1020633951 foo = bar zot = qux Submitting a job to Condor-G example 3 cont.:  Submitting a job to Condor-G example 3 cont. Of particular interest is GLOBUS_REMOTE_IO_URL environment variable: Condor-G automatically starts up a GASS remote I/O server on the submitting machine. Because of the potential for either side of the connection to fail, the URL for the server cannot be passed directly to the job. Instead, it is put into a file, and the GLOBUS_REMOTE_IO_URL environment variable points to this file. Remote jobs can read this file and use the URL it contains to access the remote GASS server running inside Condor-G. If the location of the GASS server changes (for example, if Condor-G restarts), Condor-G will contact the Globus gatekeeper and update this file on the machine where the job is running. It is therefore important that all accesses to the remote GASS server check this file for the latest location. Submitting a job to Condor-G last example:  Submitting a job to Condor-G last example A Perl script that uses the GASS server in Condor-G to copy input files to the execute machine. (the remote job counts the number of lines in a file.) Submitting a job to Condor-G last example Cont.:  Submitting a job to Condor-G last example Cont. The submit file: executable = gass-example.pl globusscheduler = biron.cs.wisc.edu/jobmanager universe = globus output = gass.out log = gass.log queue There are two optional submit description file commands of note: x509userproxy and globusrsl. 1) The x509userproxy command specifies the path to an X.509 proxy, as: x509userproxy = /path/to/proxy If this optional command is not present in the submit description file, then Condor-G checks the value of the environment variable X509_USER_PROXY for the location of the proxy. If this environment variable is not present, then Condor-G looks for the proxy in the file /tmp/x509up_u0000, where the trailing zeros in this file name are replaced with the Unix user id. Submitting a job to Condor-G last example Cont.:  Submitting a job to Condor-G last example Cont. 2)The globusrsl command is used to add additional attribute settings to a job's RSL string, as: globusrsl = (name=value)(name=value) An example of this command in a submit description file globusrsl = (project=Test_Project) This example's attribute name for the additional RSL is project, and the value assigned is Test_Project. Limitations of Condor-G :  Limitations of Condor-G No checkpoints. No matchmaking. File transfer is limited. There are no file transfer mechanisms for files other than the executable, stdin, stdout, and stderr. No job exit codes. Job exit codes are not available. Limited platform availability. Condor-G is only available on Linux, Solaris, Digital UNIX, and IRIX. HP-UX support will hopefully be available later. References:  References Globus Project www.globus.org Overviews of Grid computing: Anatomy of the grid: http://www-fp.globus.org/research/papers.html#anatomy Physiology of the grid: http://www-fp.globus.org/research/papers.html#OGSA Older, extensive: The Grid: Blueprint for a New Computing Infrastructure, I. Foster and C. Kesselman (Eds), Morgan Kaufmann, 1999. Globus FAQ http://www-fp.globus.org/about/faq/general.html Globus installation http://www-fp.globus.org/gt2/admin/guide-verify.html Condor-G manual: http://www.cs.wisc.edu/condor/manual/v6.4/5_2Condor_G.html A topical school on Grid computing will be held in Vico Equense, Italy during the last two weeks of July, 2003. For details, send an email to grid-chool@ggf.org. Global Grid Forum www.gridforum.org

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