BHL @ #TDWG09

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Information about BHL @ #TDWG09

Published on November 12, 2009

Author: chrisfreeland

Source: slideshare.net

Description

Recent developments and new technologies available through Biodiversity Heritage Library. TDWG. Montpellier, France. 12 November 2009.

LINKED LITERATURE BHL DEVELOPMENTS CITEBANK Chris Freeland Technical Director, BHL

BHL Members

BHL Members: US/UK Academy of Natural Science (Philadelphia, PA) American Museum of Natural History (New York, NY) California Academy of Science (San Francisco, CA) The Field Museum (Chicago, IL) Harvard University Botany Libraries (Cambridge, MA) Harvard University, Ernst Mayr Library of the Museum of Comparative Zoology (Cambridge, MA) Marine Biological Laboratory / Woods Hole Oceanographic Institution (Woods Hole, MA) Missouri Botanical Garden (St. Louis, MO) Natural History Museum (London, UK) The New York Botanical Garden (New York, NY) Royal Botanic Gardens, Kew (Richmond, UK) Smithsonian Institution Libraries (Washington, DC)

Academy of Natural Science (Philadelphia, PA)

American Museum of Natural History (New York, NY)

California Academy of Science (San Francisco, CA)

The Field Museum (Chicago, IL)

Harvard University Botany Libraries (Cambridge, MA)

Harvard University, Ernst Mayr Library of the Museum of Comparative Zoology (Cambridge, MA)

Marine Biological Laboratory / Woods Hole Oceanographic Institution (Woods Hole, MA)

Missouri Botanical Garden (St. Louis, MO)

Natural History Museum (London, UK)

The New York Botanical Garden (New York, NY)

Royal Botanic Gardens, Kew (Richmond, UK)

Smithsonian Institution Libraries (Washington, DC)

BHL Members: BHL-Europe Museum für Naturkunde - Leibniz-Institut für Evolutions- und Biodiversitätsforschung an der Humboldt-Universität zu Berlin Natural History Museum, UK Narodni muzeum NMP CZ Angewandte Informationstechnik Forschungsgesellschaft mbH Freie Universität Berlin FUBBGBM Georg-August-Universität Göttingen Stiftung Öffentlichen Rechts Naturhistorisches Museum Wien Hungarian Natural History Museum Museum and Institute of Zoology, Polish Academy of Sciences University of Copenhagen Stichting Nationaal Natuurhistorisch Museum, Naturalis National Botanic Garden of Belgium Royal Museum for Central Africa, Royal Belgian Institute of Natural Sciences Bibliothèque nationale de France Museum national d’histoire naturelle Consejo Superior de Investigaciones Cientificas Università degli Studi di Firenze Royal Botanic Garden, Edinburgh Species 2000 John Wiley & Sons limited Helsingin yliopisto UH-Viikki

Museum für Naturkunde - Leibniz-Institut für Evolutions- und Biodiversitätsforschung an der Humboldt-Universität zu Berlin

Natural History Museum, UK

Narodni muzeum NMP CZ

Angewandte Informationstechnik Forschungsgesellschaft mbH

Freie Universität Berlin FUBBGBM

Georg-August-Universität Göttingen Stiftung Öffentlichen Rechts

Naturhistorisches Museum Wien

Hungarian Natural History Museum

Museum and Institute of Zoology, Polish Academy of Sciences

University of Copenhagen

Stichting Nationaal Natuurhistorisch Museum, Naturalis

National Botanic Garden of Belgium

Royal Museum for Central Africa,

Royal Belgian Institute of Natural Sciences

Bibliothèque nationale de France

Museum national d’histoire naturelle

Consejo Superior de Investigaciones Cientificas

Università degli Studi di Firenze

Royal Botanic Garden, Edinburgh

Species 2000

John Wiley & Sons limited

Helsingin yliopisto UH-Viikki

Stats: Now Online 15,000 titles 40,000 volumes 16.4mil pages Soon: 34,000 titles 65,000 volumes 24mil pages Oldest book: Schöffer’s Herbarius , 1484.

15,000 titles

40,000 volumes

16.4mil pages

Soon:

34,000 titles

65,000 volumes

24mil pages

Stats: Usage Jan – Sep 2009 266,000 visitors 436,000 visits 2.1million pageviews Daily average 970 visitors 1,600 visits / day 7,700 pageviews / day Jan – Sep 2009 Launch to 30 Sep 2009

Jan – Sep 2009

266,000 visitors

436,000 visits

2.1million pageviews

Daily average

970 visitors

1,600 visits / day

7,700 pageviews / day

Cloud storage & computing

Global, coordinated development New functionality from BHL-Europe Improved deduplication tools Semantic interface OAIS-compliant preservation infrastructure Building a community of developers Funded & volunteer RubyBHL: http://github.com/mjy/rubyBHL PyBHL: http://linux.softpedia.com/get/Programming/Libraries/pybhl-51612.shtml New partners, new content

New functionality from BHL-Europe

Improved deduplication tools

Semantic interface

OAIS-compliant preservation infrastructure

Building a community of developers

Funded & volunteer

RubyBHL: http://github.com/mjy/rubyBHL

PyBHL: http://linux.softpedia.com/get/Programming/Libraries/pybhl-51612.shtml

New partners, new content

Open Source Pageturning UI http://github.com/openlibrary/bookreader

Open Software & Development BHL Bits: Portal code, utilities, services http://code.google.com/p/bhl-bits/ Taxonomic Literature Group Google Group for discussion of “taxonomic literature & the services required to make literature interoperable within biodiversity research and biodiversity informatics.” http://groups.google.com/group/taxonlit

BHL Bits:

Portal code, utilities, services

http://code.google.com/p/bhl-bits/

Taxonomic Literature Group

Google Group for discussion of “taxonomic literature & the services required to make literature interoperable within biodiversity research and biodiversity informatics.”

http://groups.google.com/group/taxonlit

Open Data Downloads Simple tab-delimited exports of core data http://www.biodiversitylibrary.org/data/BHLExportSchema.pdf Data model DB schema as ERD http://bhl-bits.googlecode.com/files/20090930_BHLDataModel.pdf

Downloads

Simple tab-delimited exports of core data

http://www.biodiversitylibrary.org/data/BHLExportSchema.pdf

Data model

DB schema as ERD

http://bhl-bits.googlecode.com/files/20090930_BHLDataModel.pdf

Services Names Service Return all occurrences of a name throughout BHL digitized corpus Documentation: http://bit.ly/2e6sg9 Access to 51million name strings using TaxonFinder 1.4million unique names Working out a strategy for obscure species Algorithm improvements to detect nomenclatural & taxonomic acts OpenURL Facilitate links to citations: protologues, articles, references Documentation: http://www.biodiversitylibrary.org/openurlhelp.aspx Useful to Nomenclators, Reference Systems IPNI Tropicos

Names Service

Return all occurrences of a name throughout BHL digitized corpus

Documentation: http://bit.ly/2e6sg9

Access to 51million name strings using TaxonFinder

1.4million unique names

Working out a strategy for obscure species

Algorithm improvements to detect nomenclatural & taxonomic acts

OpenURL

Facilitate links to citations: protologues, articles, references

Documentation: http://www.biodiversitylibrary.org/openurlhelp.aspx

Useful to Nomenclators, Reference Systems

IPNI

Tropicos

Services: OpenURL http://www.biodiversitylibrary.org/openurl? pid=title:3934&volume=14&issue=&spage=301&date=1879 http://www.tropicos.org/Name/1200408

Services: OpenURL Disambiguation Looking for: BHL returns:

Looking for:

BHL returns:

Services: OpenURL Results

How? Tropicos maintains internal authority list of publications: Each protologue/reference tied to authority: Matched Tropicos TitleIDs to BHL TitleIDs: Throw citations at resolver at regular intervals & cache data in Tropicos http://www.tropicos.org/Publication/775 http://www.biodiversitylibrary.org/title/3934 http://www.tropicos.org/Publication/775 = http://www.biodiversitylibrary.org/openurl? pid=title:3934&volume=14&issue=&spage=301&date=1879

Tropicos maintains internal authority list of publications:

Each protologue/reference tied to authority:

Matched Tropicos TitleIDs to BHL TitleIDs:

Throw citations at resolver at regular intervals & cache data in Tropicos

Encyclopedia of Life 522,000 species pages linked to BHL #1 referring site

522,000 species pages linked to BHL

#1 referring site

Other Consumers EarthCape Labs Sort/Search capabilities with harvested names YouTube demo: http://www.youtube.com/watch?v=qw7qw87JTOs BioGUID / iPhylo BHL Name Timeline & Comparison http://bioguid.info/bhl/ http://bioguid.info/bhl/compare.php New Viewer Tagging So much cool stuff we can’t keep up! http://iphylo.blogspot.com/search/label/BHL @rdmpage

EarthCape Labs

Sort/Search capabilities with harvested names

YouTube demo: http://www.youtube.com/watch?v=qw7qw87JTOs

BioGUID / iPhylo

BHL Name Timeline & Comparison

http://bioguid.info/bhl/

http://bioguid.info/bhl/compare.php

New Viewer

Tagging

So much cool stuff we can’t keep up!

http://iphylo.blogspot.com/search/label/BHL

http://bioguid.info/bhl/compare.php?name1=Physeter+catodon&name2=Physeter+macrocephalus

Crowdsourced Articles http://www.biodiversitylibrary.org/pdfgen/17298 Demo: http://youtube.com/watch?v=oidf3b26jVs

http://www.biodiversitylibrary.org/pdfgen/17298

Crowdsourced Articles 12,000 PDFs generated through September 2009 4,900 submitted with article metadata Analysis: http://bit.ly/4Jqu9

12,000 PDFs generated through September 2009

4,900 submitted with article metadata

Analysis: http://bit.ly/4Jqu9

Great, but how to… display / manage? meet community demands for bibliography / citation management? build from more open source tools?

display / manage?

meet community demands for bibliography / citation management?

build from more open source tools?

Development goals re: citations Create a repository for community-vetted taxonomic bibliographies. Ability to ingest, display, download, and index articles so that the BHL can operate as an article repository. Build from existing community of work around Drupal / Biblio. In use by collaborators

Create a repository for community-vetted taxonomic bibliographies.

Ability to ingest, display, download, and index articles so that the BHL can operate as an article repository.

Build from existing community of work around Drupal / Biblio.

In use by collaborators

“ something like GenBank or NameBank for citations…” So, CitationBank…or CiteBank (saves chars) Need…

“ something like GenBank or NameBank for citations…”

So, CitationBank…or CiteBank (saves chars)

http://citebank.biodiversitylibrary.org/

Crowdsourced Articles PDFs from BHL pushed into Drupal/Biblio:

PDFs from BHL pushed into Drupal/Biblio:

http://citebank.biodiversitylibrary.org/ search

http://citebank.biodiversitylibrary.org/node/47423

PDF http://www.biodiversitylibrary.org/pdf1/000295100017298.pdf

 

CiteBank boundaries Book Citation Pageturning UI PDF OCR eBook/Kindle Stored *somewhere* & retrievable via HTTP URI Citation Citation Citation Bibliography CiteBank

BHL Data Flow – Sep 2009 CiteBank

Copyright Bold statements that need some good legal counsel: Citations don’t have copyright Unless you get them from OCLC, other services Bibliographies have copyright They’re a scholarly work Underlying content has copyright Except when it doesn’t

Bold statements that need some good legal counsel:

Citations don’t have copyright

Unless you get them from OCLC, other services

Bibliographies have copyright

They’re a scholarly work

Underlying content has copyright

Except when it doesn’t

Up for discussion…

Who can upload & edit? Trusted repositories? Approved specialists? BHL Librarians? People in this session? Citizen scientists? 6 th graders? Rod Page?

Trusted repositories?

Approved specialists?

BHL Librarians?

People in this session?

Citizen scientists?

6 th graders?

Rod Page?

What about duplicates? 3 Bibliographies had Syst. Nat. All 3 in different reference manager formats All 3 had variant forms of title: Syst. Nat. Systema Naturae Systema naturae per regna tria naturae Library catalogues: Caroli Linnaei...Systema naturae per regna tria naturae :secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis.

3 Bibliographies had Syst. Nat.

All 3 in different reference manager formats

All 3 had variant forms of title:

Syst. Nat.

Systema Naturae

Systema naturae per regna tria naturae

Library catalogues:

Caroli Linnaei...Systema naturae per regna tria naturae :secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis.

Accuracy How clean is clean? How dirty is dirty? What’s good enough? How to Rank Gold/Platinum ranking? Dirty Bucket / Clean Bucket?

How clean is clean?

How dirty is dirty?

What’s good enough?

How to Rank

Gold/Platinum ranking?

Dirty Bucket / Clean Bucket?

Right technologies? “ But Drupal’s awful…just ask ___ for their bad experience.” “ Drupal’s great!” “ MySQL won’t scale” “ MySQL’s great!”

“ But Drupal’s awful…just ask ___ for their bad experience.”

“ Drupal’s great!”

“ MySQL won’t scale”

“ MySQL’s great!”

Next steps Bring hardware online at MBL Have one point of redundancy By Q1 2010 Bring BHL-Europe & other nodes online In conjunction with DuraCloud & other solutions Release CiteBank for beta & sandbox testing Beta at http://citebank.biodiversitylibrary.org Sandbox at http://sandcite.biodiversitylibrary.org Production release by Q2 2010 Integration of BHL-Europe tools & content

Bring hardware online at MBL

Have one point of redundancy

By Q1 2010

Bring BHL-Europe & other nodes online

In conjunction with DuraCloud & other solutions

Release CiteBank for beta & sandbox testing

Beta at http://citebank.biodiversitylibrary.org

Sandbox at http://sandcite.biodiversitylibrary.org

Production release by Q2 2010

Integration of BHL-Europe tools & content

Coming soon Darwin’s Library AMNH, NHM, CUL, BHL (MOBOT) Funded by NEH/JISC Digitization of Darwin’s personal library, with annotations New interfaces for recording, indexing, displaying annotations Inhouse scanning from partners/contributors

Darwin’s Library

AMNH, NHM, CUL, BHL (MOBOT)

Funded by NEH/JISC

Digitization of Darwin’s personal library, with annotations

New interfaces for recording, indexing, displaying annotations

Inhouse scanning from partners/contributors

Fun: BHL In Your Pocket! Content now available in EPUB format Used by Stanza, transferable to Kindle Blog post by John Mignault (NYBG): http://john.mignault.net/blog/2009/10/28/first-bhl-e-book-experiments/

Content now available in EPUB format

Used by Stanza, transferable to Kindle

Blog post by John Mignault (NYBG):

http://john.mignault.net/blog/2009/10/28/first-bhl-e-book-experiments/

 

Links & such Biodiversity Heritage Library http://biodiversitylibrary.org CiteBank beta http://citebank.biodiversitylibrary.org CiteBank sandbox http://sandcite.biodiversitylibrary.org Go play! http://twitter.com/BioDivLibrary Follow BHL on

Thanks! Chris Freeland Technical Director, BHL Director, Center for Biodiversity Informatics, Missouri Botanical Garden [email_address] http://twitter.com/chrisfreeland Presentation online through TDWG & at http://www.chrisfreeland.com

Chris Freeland

Technical Director, BHL

Director, Center for Biodiversity Informatics, Missouri Botanical Garden

[email_address]

http://twitter.com/chrisfreeland

Presentation online through TDWG & at http://www.chrisfreeland.com

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