17 use of germplasm in association genetics aranzana maria jose

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Information about 17 use of germplasm in association genetics aranzana maria jose

Published on February 28, 2014

Author: fruitbreedomics

Source: slideshare.net

Use of germplasm in association genetics PEACH EXAMPLE Maria José Aranzana YOUR LOGO

FruitBreedomics PEACH DATASET 4271 SNPs x 1540 ACCESSIONS Huge Dataset YOUR LOGO

FruitBreedomics PEACH DATASET 4271 SNPs x 1540 ACCESSIONS Huge Dataset x Phenotypic data http://155.253.6.237/fruitbreedomic s_save_and_continue_wp/ Good tool for breeders and germplasm curators TrainingWorkshop_DATA.xlsx YOUR LOGO

LINKAGE DISEQUILIBRIUM (LD) YOUR LOGO

WHOLE GENOME ASSOCIATION ANALISIS - YOUR LOGO + Level of association

CONCLUSIONS • Peach genome is structured in big blocks of variability • In general, each breeding program has its own pattern of variability (breeder+ “founders”+ breeding location imprint) • A deep view of genome-wide variability can be used to: • localize genes • direct the variability for crosses • manage the variability in a germplasm collection YOUR LOGO

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