Published on February 28, 2014
Use of germplasm in association genetics PEACH EXAMPLE Maria José Aranzana YOUR LOGO
FruitBreedomics PEACH DATASET 4271 SNPs x 1540 ACCESSIONS Huge Dataset YOUR LOGO
FruitBreedomics PEACH DATASET 4271 SNPs x 1540 ACCESSIONS Huge Dataset x Phenotypic data http://188.8.131.52/fruitbreedomic s_save_and_continue_wp/ Good tool for breeders and germplasm curators TrainingWorkshop_DATA.xlsx YOUR LOGO
LINKAGE DISEQUILIBRIUM (LD) YOUR LOGO
WHOLE GENOME ASSOCIATION ANALISIS - YOUR LOGO + Level of association
CONCLUSIONS • Peach genome is structured in big blocks of variability • In general, each breeding program has its own pattern of variability (breeder+ “founders”+ breeding location imprint) • A deep view of genome-wide variability can be used to: • localize genes • direct the variability for crosses • manage the variability in a germplasm collection YOUR LOGO
View Maria Jose Aranzana (Maria ... and Validation in Breeding Germplasm. ... association mapping reveals a rich genetic architecture ...
TRAINING SESSION ON GERMPLASM. Genetic ... Use of germplasm in association genetics. Maria José Aranzana ... 1 Pre-breeding material and germplasm. 2 Use ...
WP4-Exploiting the phenotypic and genetic diversity in apple and peach germplasm and its exploitation by AG approach;
It also allows a rapid evaluation of germplasm, ... association genetics, ... Maria Jose Aranzana.
Maria Jose Aranzana Jordi ... a yield of one polymorphic microsatellite every 2.17 ... the genetic diversity of germplasm representing ...
appropriate methodology for genetic association mapping. ... 17. Aranzana MJ, Kim ... Maria José Aranzana Subject: BMC Genetics 2010 11:69. doi:10.1186 ...